PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000753.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 278aa    MW: 30724.5 Da    PI: 9.3229
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000753.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-192878155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++ GVr+++ +g+WvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  Pbr000753.1 28 CKFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAAYLLRG 78
                 799*******.7*********33....36**********************99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.73E-332888No hitNo description
PfamPF008472.8E-132878IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-292987IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-202987IPR016177DNA-binding domain
PROSITE profilePS5103220.8772986IPR001471AP2/ERF domain
SMARTSM003805.2E-382992IPR001471AP2/ERF domain
PRINTSPR003674.7E-83041IPR001471AP2/ERF domain
PRINTSPR003674.7E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEHQAPKQQK GAFANKQGKS KERTKSKCKF VGVRQRPSGK WVAEIKDTTK KIRMWLGTFE  60
TAEEAARAYD EAAYLLRGSN TRTNFPTHVP SNSPLSLKII NLLNQKKGLK QSPSSSNPNS  120
LNSTPIATTT RITNKYTTFS DGSANSIATF SETFLPDCKS QKNVQVFDDA YRPDVSNCIG  180
VLQPGLFRNH FGRQWPLLTG FDQLPVTHEG NDLAKDIGMT SSPNVAAEPE FERLKVERQI  240
SASTYAMNGV NEYLDNGYDS GDALWDLTSL SQLFCLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-173089363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375859.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLM5WFH41e-119M5WFH4_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s21090.14e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-52related to AP2 11